Variant report
| Variant | rs61771966 |
|---|---|
| Chromosome Location | chr1:85699976-85699977 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:85699524..85701139-chr1:85723036..85725582,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162642 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1674162 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17124475 | 0.88[EUR][1000 genomes] |
| rs17125070 | 0.85[EUR][1000 genomes] |
| rs17382610 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17386490 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17386581 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61769452 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61769454 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61771963 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61771964 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs61771967 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61771968 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61771969 | 0.89[EUR][1000 genomes] |
| rs61771970 | 0.88[EUR][1000 genomes] |
| rs61771973 | 0.87[EUR][1000 genomes] |
| rs61771976 | 0.84[EUR][1000 genomes] |
| rs61771977 | 0.84[EUR][1000 genomes] |
| rs61771978 | 0.84[EUR][1000 genomes] |
| rs61771979 | 0.84[EUR][1000 genomes] |
| rs817456 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs817457 | 0.82[AMR][1000 genomes] |
| rs860140 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006994 | chr1:85454304-86327679 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv34165 | chr1:85542040-85846249 | Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv830459 | chr1:85589585-85786311 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:85687000-85709600 | Weak transcription | Aorta | Aorta |
| 2 | chr1:85696400-85705600 | Weak transcription | Fetal Heart | heart |
