Variant report

Variant	rs17386697
Chromosome Location	chr14:32542835-32542836
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:32542707-32543202	HCT-116	colon:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
2	GTF2F1	chr14:32542800-32543172	Hela-S3	cervix:	n/a	n/a
3	RAD21	chr14:32542585-32543377	HepG2	liver:	n/a	n/a
4	CTCF	chr14:32542511-32543187	HepG2	liver:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
5	RAD21	chr14:32542756-32543157	GM12878	blood:	n/a	n/a
6	SMC3	chr14:32542335-32543284	SK-N-SH	brain:	n/a	n/a
7	CTCF	chr14:32542820-32542970	BE2_C	brain:	n/a	n/a
8	CTCF	chr14:32542757-32543177	A549	lung:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
9	RAD21	chr14:32542795-32543148	A549	lung:	n/a	n/a
10	CTCF	chr14:32542830-32543083	ECC-1	luminal epithelium:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
11	RAD21	chr14:32542757-32543186	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr14:32542725-32543217	IMR90	lung:	n/a	n/a
13	RAD21	chr14:32542725-32543189	Hela-S3	cervix:	n/a	n/a
14	SMC3	chr14:32542718-32543232	GM12878	blood:	n/a	n/a
15	CTCF	chr14:32542326-32543454	SK-N-SH	brain:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
16	CTCF	chr14:32542735-32543214	HCT-116	colon:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
17	FOS	chr14:32542834-32543062	MCF10A-Er-Src	breast:	n/a	n/a
18	RUNX3	chr14:32542785-32543208	GM12878	blood:	n/a	n/a
19	ZC3H11A	chr14:32542762-32542943	K562	blood:	n/a	n/a
20	CTCF	chr14:32542279-32544249	A549	lung:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
21	RAD21	chr14:32542634-32543315	MCF-7	breast:	n/a	n/a
22	RAD21	chr14:32542669-32543311	A549	lung:	n/a	n/a
23	RAD21	chr14:32542727-32543211	ECC-1	luminal epithelium:	n/a	n/a
24	CTCF	chr14:32542780-32542930	HAc	cerebellar:	n/a	n/a
25	CTCF	chr14:32542742-32543200	GM12878	blood:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
26	RAD21	chr14:32542657-32543262	A549	lung:	n/a	n/a
27	RFX5	chr14:32542801-32543174	Hela-S3	cervix:	n/a	n/a
28	SMC3	chr14:32542714-32543198	Hela-S3	cervix:	n/a	n/a
29	IRF3	chr14:32542649-32543032	Hela-S3	cervix:	n/a	n/a
30	CTCF	chr14:32542788-32543127	SK-N-SH_RA	brain:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
31	RAD21	chr14:32542549-32543744	SK-N-SH	brain:	n/a	n/a
32	RAD21	chr14:32542761-32543118	SK-N-SH_RA	brain:	n/a	n/a
33	CTCF	chr14:32542809-32543108	Lung_OC	lung:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
34	CTCF	chr14:32542729-32543125	MCF-7	breast:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
35	ZNF143	chr14:32542823-32543164	GM12878	blood:	n/a	n/a
36	CTCF	chr14:32542811-32543140	A549	lung:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
37	MYC	chr14:32542813-32543126	MCF10A-Er-Src	breast:	n/a	n/a
38	CTCF	chr14:32542814-32543144	Spleen_OC	spleen:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
39	RAD21	chr14:32542779-32543177	H1-hESC	embryonic stem cell:	n/a	n/a
40	ZNF143	chr14:32542779-32543125	K562	blood:	n/a	n/a
41	RAD21	chr14:32542749-32543118	HepG2	liver:	n/a	n/a
42	CTCF	chr14:32542665-32543269	MCF-7	breast:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
43	POLR2A	chr14:32542816-32543198	MCF10A-Er-Src	breast:	n/a	n/a
44	CTCF	chr14:32542801-32543071	A549	lung:	n/a	chr14:32542976-32542985 chr14:32542973-32542991
45	CEBPB	chr14:32542757-32543152	Hela-S3	cervix:	n/a	n/a
46	TBL1XR1	chr14:32542806-32542980	K562	blood:	n/a	n/a
47	ARID3A	chr14:32542760-32543259	HepG2	liver:	n/a	chr14:32543182-32543198
48	RAD21	chr14:32542739-32543148	H1-hESC	embryonic stem cell:	n/a	n/a
49	CEBPB	chr14:32542792-32543107	A549	lung:	n/a	n/a
50	MYC	chr14:32542806-32543165	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:32542579..32543458-chr14:32720482..32722172,6	MCF-7	breast:
2	chr14:32542534..32543435-chr14:32713337..32714270,5	MCF-7	breast:
3	chr14:32539752..32543280-chr14:32710487..32713708,3	MCF-7	breast:
4	chr14:32404484..32405348-chr14:32542806..32543426,2	MCF-7	breast:
5	chr14:31979520..31980020-chr14:32542725..32543442,2	MCF-7	breast:
6	chr14:32394502..32396600-chr14:32540991..32542877,2	K562	blood:
7	chr14:32542464..32543042-chr14:32723232..32724070,2	K562	blood:
8	chr14:32542502..32543704-chr14:32720937..32721764,5	MCF-7	breast:
9	chr14:32452982..32453943-chr14:32542808..32543419,2	MCF-7	breast:
10	chr14:32542547..32543455-chr14:32714700..32715234,2	MCF-7	breast:
11	chr14:32541574..32544003-chr14:32548339..32550876,2	MCF-7	breast:
12	chr14:32542593..32543321-chr14:32699236..32699968,2	MCF-7	breast:
13	chr14:32540232..32544144-chr14:32544366..32548398,5	MCF-7	breast:
14	chr14:32479696..32481558-chr14:32541309..32543692,2	MCF-7	breast:
15	chr14:32542506..32543573-chr14:32720989..32721921,5	K562	blood:
16	chr14:32477098..32479521-chr14:32541403..32543078,2	MCF-7	breast:

Variant related genes	Relation type
ARHGAP5	TF binding region
ENSG00000100852	Chromatin interaction
ENSG00000258619	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56329808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32539200-32545000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:32539800-32543400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:32541600-32543000	Enhancers	Brain Substantia Nigra	brain
4	chr14:32541600-32544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:32542000-32544200	Enhancers	Stomach Smooth Muscle	stomach
6	chr14:32542200-32543000	Enhancers	Liver	Liver
7	chr14:32542200-32543400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:32542400-32543000	Enhancers	A549	lung
9	chr14:32542600-32543200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr14:32542600-32543600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr14:32542600-32543800	Enhancers	Fetal Heart	heart
12	chr14:32542600-32543800	Enhancers	HMEC	breast
13	chr14:32542600-32544000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:32542600-32544200	Weak transcription	Brain Angular Gyrus	brain
15	chr14:32542800-32543000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:32542800-32543800	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:32542800-32544000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:32542800-32544200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:32542800-32544200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:32542800-32544200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:32542800-32544200	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:32542800-32544200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:32542800-32544400	Weak transcription	Brain Germinal Matrix	brain
24	chr14:32542800-32544800	Weak transcription	Brain Cingulate Gyrus	brain

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