Variant report

Variant	rs56329808
Chromosome Location	chr14:32720918-32720919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32720658..32723115-chr14:32723813..32725711,2	K562	blood:
2	chr14:32714513..32717324-chr14:32719645..32722462,2	K562	blood:
3	chr14:32542263..32548476-chr14:32718858..32724854,7	MCF-7	breast:
4	chr14:32542579..32543458-chr14:32720482..32722172,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17386697	1.00[AMR][1000 genomes]
rs74043715	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32715200-32727600	Weak transcription	Psoas Muscle	Psoas
2	chr14:32718800-32721000	Weak transcription	Fetal Heart	heart
3	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
4	chr14:32719400-32721000	Weak transcription	HepG2	liver
5	chr14:32719400-32727800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:32719600-32724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:32719600-32727800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32719800-32721200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:32720000-32721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:32720000-32721200	Weak transcription	HMEC	breast
11	chr14:32720000-32721600	Enhancers	Fetal Brain Male	brain
12	chr14:32720200-32721800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:32720200-32721800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:32720400-32721400	Enhancers	Brain Anterior Caudate	brain
15	chr14:32720400-32721400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:32720400-32721600	Enhancers	Fetal Stomach	stomach
17	chr14:32720400-32721800	Enhancers	Brain Germinal Matrix	brain
18	chr14:32720400-32721800	Enhancers	Brain Substantia Nigra	brain
19	chr14:32720600-32721400	Enhancers	Fetal Lung	lung
20	chr14:32720600-32721400	Enhancers	Stomach Smooth Muscle	stomach
21	chr14:32720600-32721600	Enhancers	NHEK	skin
22	chr14:32720800-32721000	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr14:32720800-32721200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr14:32720800-32721400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:32720800-32721400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:32720800-32721600	Enhancers	Brain Cingulate Gyrus	brain
27	chr14:32720800-32721600	Enhancers	Brain Hippocampus Middle	brain
28	chr14:32720800-32721600	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:32720800-32721600	Enhancers	A549	lung

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