Variant report

Variant	rs17386715
Chromosome Location	chr15:74507316-74507317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:74507218-74507962	A549	lung:	n/a	chr15:74507410-74507424
2	MYC	chr15:74507238-74507894	MCF10A-Er-Src	breast:	n/a	n/a
3	TCF12	chr15:74507082-74508088	A549	lung:	n/a	n/a
4	SIN3AK20	chr15:74507210-74508201	MCF-7	breast:	n/a	n/a
5	RAD21	chr15:74507303-74508123	Hela-S3	cervix:	n/a	n/a
6	FOS	chr15:74507249-74507883	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr15:74507314-74508118	Hela-S3	cervix:	n/a	chr15:74507788-74507799
8	FOS	chr15:74507200-74507875	MCF10A-Er-Src	breast:	n/a	n/a
9	MAZ	chr15:74507301-74507668	Hela-S3	cervix:	n/a	n/a
10	NR3C1	chr15:74507269-74507814	A549	lung:	n/a	n/a
11	FOS	chr15:74507282-74507866	MCF10A-Er-Src	breast:	n/a	n/a
12	ZNF263	chr15:74506814-74507635	HEK293-T-REx	kidney:	n/a	chr15:74506856-74506865 chr15:74507443-74507452
13	KAP1	chr15:74507257-74508036	HEK293	kidney:	n/a	n/a
14	MYC	chr15:74507186-74507883	MCF10A-Er-Src	breast:	n/a	n/a
15	NR3C1	chr15:74507286-74507883	A549	lung:	n/a	n/a
16	NR2F2	chr15:74507238-74507957	MCF-7	breast:	n/a	n/a
17	FOSL2	chr15:74507140-74507981	A549	lung:	n/a	n/a
18	PBX3	chr15:74507099-74507831	SK-N-SH	brain:	n/a	n/a
19	SP1	chr15:74507220-74508057	A549	lung:	n/a	chr15:74507410-74507424 chr15:74507971-74507981
20	TFAP2A	chr15:74507314-74507738	Hela-S3	cervix:	n/a	chr15:74507559-74507574
21	TCF12	chr15:74507136-74507992	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74504672..74507489-chr15:74514073..74516992,2	MCF-7	breast:
2	chr15:74497610..74499444-chr15:74504967..74507735,2	K562	blood:

Variant related genes	Relation type
CCDC33	TF binding region
STRA6	TF binding region
ENSG00000259264	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12911385	0.83[ASN][1000 genomes]
rs2629727	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351156	0.92[ASN][1000 genomes]
rs351222	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs351223	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs351224	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs435293	0.85[CHB][hapmap]
rs531491	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74489200-74509600	Weak transcription	Gastric	stomach
2	chr15:74501200-74507400	Weak transcription	Spleen	Spleen
3	chr15:74502200-74508800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74502400-74507400	Weak transcription	Placenta	Placenta
5	chr15:74503800-74507400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr15:74504000-74508800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:74504000-74508800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:74504200-74508200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:74504200-74508600	Enhancers	HepG2	liver
10	chr15:74504200-74508800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:74504200-74508800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr15:74504400-74508400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:74504400-74508800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74504400-74508800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74504400-74508800	Enhancers	Fetal Thymus	thymus
16	chr15:74504400-74510400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:74504600-74507600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr15:74505200-74508600	Enhancers	GM12878-XiMat	blood
19	chr15:74505600-74507600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr15:74505600-74507600	Enhancers	Fetal Brain Male	brain
21	chr15:74505600-74508200	Enhancers	Fetal Muscle Trunk	muscle
22	chr15:74505800-74507600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:74505800-74507600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:74505800-74508400	Enhancers	Fetal Lung	lung
25	chr15:74505800-74508600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:74505800-74508600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:74505800-74508600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:74505800-74508600	Enhancers	Fetal Muscle Leg	muscle
29	chr15:74506000-74507600	Enhancers	Fetal Brain Female	brain
30	chr15:74506000-74507800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:74506000-74507800	Enhancers	Brain Germinal Matrix	brain
32	chr15:74506000-74508000	Enhancers	Fetal Stomach	stomach
33	chr15:74506000-74508800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr15:74506200-74507400	Weak transcription	Right Ventricle	heart
35	chr15:74506200-74508600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:74506400-74508400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:74506400-74508800	Enhancers	NH-A	brain
38	chr15:74506600-74507400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
40	chr15:74506800-74508600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:74506800-74508800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:74506800-74513800	Weak transcription	Fetal Heart	heart
43	chr15:74507000-74507600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr15:74507000-74507600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr15:74507000-74507600	Bivalent Enhancer	NHEK	skin
46	chr15:74507000-74507800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:74507000-74508000	Flanking Active TSS	A549	lung
48	chr15:74507000-74508400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:74507000-74508400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr15:74507000-74508400	Flanking Active TSS	Hela-S3	cervix

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