Variant report

Variant	rs531491
Chromosome Location	chr15:74512235-74512236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74489028..74490850-chr15:74509672..74512569,2	MCF-7	breast:
2	chr15:74503151..74507416-chr15:74511304..74513886,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17386715	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2629727	0.92[YRI][hapmap];0.86[AMR][1000 genomes]
rs351156	0.86[AFR][1000 genomes]
rs351219	0.91[GIH][hapmap]
rs351222	0.83[AFR][1000 genomes]
rs351223	0.94[ASW][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs351224	0.94[ASW][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs435293	0.81[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs62003663	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs748608	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
2	chr15:74506800-74513800	Weak transcription	Fetal Heart	heart
3	chr15:74507000-74514000	Weak transcription	Right Atrium	heart
4	chr15:74507800-74512400	Weak transcription	Brain Germinal Matrix	brain
5	chr15:74508000-74512600	Weak transcription	Fetal Kidney	kidney
6	chr15:74508000-74512800	Weak transcription	Fetal Stomach	stomach
7	chr15:74508200-74512600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:74508400-74512800	Weak transcription	Fetal Lung	lung
9	chr15:74508600-74512600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:74508800-74512400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74508800-74512400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:74508800-74512800	Weak transcription	Fetal Thymus	thymus
13	chr15:74510600-74513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:74511000-74513800	Weak transcription	Hela-S3	cervix
15	chr15:74512000-74512800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:74512200-74515200	Enhancers	Fetal Brain Female	brain
17	chr15:74512200-74515400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:74512200-74516600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:74512200-74518800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain

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