Variant report

Variant	rs17389556
Chromosome Location	chr7:103964909-103964910
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10487202	0.81[AMR][1000 genomes]
rs12056137	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17136356	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17136413	0.86[EUR][1000 genomes]
rs62486509	0.81[AMR][1000 genomes]
rs62488012	0.82[EUR][1000 genomes]
rs62488031	0.86[EUR][1000 genomes]
rs62488032	0.86[EUR][1000 genomes]
rs62489767	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62489768	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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