Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:125932988..125935844-chr8:125938111..125940601,2	MCF-7	breast:
2	chr8:125868981..125870600-chr8:125931109..125933368,2	MCF-7	breast:
3	chr8:125827705..125829583-chr8:125932837..125935180,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000255491	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10956223	0.97[ASN][1000 genomes]
rs10956224	0.96[ASN][1000 genomes]
rs11776042	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11781649	0.81[ASN][1000 genomes]
rs11781785	0.81[ASN][1000 genomes]
rs11781812	0.98[ASN][1000 genomes]
rs11782252	0.88[ASN][1000 genomes]
rs11782787	0.96[ASN][1000 genomes]
rs11782922	0.96[ASN][1000 genomes]
rs11782982	0.96[ASN][1000 genomes]
rs11785339	0.84[ASN][1000 genomes]
rs12542299	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1427083	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1427088	0.98[ASN][1000 genomes]
rs1427090	0.96[ASN][1000 genomes]
rs16900085	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16900093	0.95[ASN][1000 genomes]
rs2052781	0.85[ASN][1000 genomes]
rs2052782	0.85[ASN][1000 genomes]
rs2052783	0.84[ASN][1000 genomes]
rs2052784	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2052785	0.83[ASN][1000 genomes]
rs2052786	0.84[ASN][1000 genomes]
rs4409411	0.95[ASN][1000 genomes]
rs4567058	0.88[ASN][1000 genomes]
rs58514883	0.83[ASN][1000 genomes]
rs61411054	0.99[ASN][1000 genomes]
rs7841783	0.84[EUR][1000 genomes]
rs986499	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125931400-125933800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:125932600-125933400	Enhancers	Placenta	Placenta
3	chr8:125932600-125933800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:125932600-125934200	Enhancers	Fetal Intestine Large	intestine
5	chr8:125932800-125933400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:125932800-125934200	Flanking Active TSS	HepG2	liver
7	chr8:125932800-125934400	Enhancers	Fetal Heart	heart
8	chr8:125932800-125936800	Weak transcription	Right Atrium	heart
9	chr8:125933000-125934000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:125933000-125934200	Enhancers	K562	blood

Quick Search: