Variant report

Variant	rs986499
Chromosome Location	chr8:125927739-125927740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125922613..125924246-chr8:125927138..125929372,2	MCF-7	breast:
2	chr8:125869478..125872586-chr8:125926416..125930050,3	MCF-7	breast:
3	chr8:125877381..125879616-chr8:125926000..125927902,2	MCF-7	breast:
4	chr8:125919411..125921698-chr8:125926502..125928708,2	MCF-7	breast:
5	chr1:117602865..117605635-chr8:125927109..125929309,2	MCF-7	breast:
6	chr8:125903181..125907429-chr8:125925929..125929993,4	K562	blood:
7	chr8:125864922..125866655-chr8:125925294..125927990,2	MCF-7	breast:
8	chr8:125922807..125927741-chr8:125929705..125933401,5	MCF-7	breast:
9	chr8:125927702..125929777-chr8:125936123..125937814,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10956223	0.83[ASN][1000 genomes]
rs11776042	0.80[EUR][1000 genomes]
rs16900085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395997	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1820534	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28817723	0.96[ASN][1000 genomes]
rs28824798	0.96[ASN][1000 genomes]
rs6470323	0.91[ASN][1000 genomes]
rs6998420	0.91[ASN][1000 genomes]
rs7841783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125925600-125931200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:125926200-125929600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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