Variant report

Variant rs17396558
Chromosome Location chr2:33245903-33245904
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:33237600-33246000 Weak transcription Brain Germinal Matrix brain
2 chr2:33239600-33246000 Weak transcription Aorta Aorta
3 chr2:33239600-33246000 Weak transcription Fetal Kidney kidney
4 chr2:33239800-33246000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:33240000-33246000 Weak transcription NH-A brain
6 chr2:33240400-33246000 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr2:33240400-33246400 Weak transcription Stomach Smooth Muscle stomach
8 chr2:33241200-33248000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr2:33241200-33249800 Weak transcription Esophagus oesophagus
10 chr2:33241400-33246200 Weak transcription NHLF lung
11 chr2:33241400-33246800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr2:33241400-33246800 Weak transcription Muscle Satellite Cultured Cells --
13 chr2:33241400-33246800 Weak transcription Placenta Amnion Placenta Amnion
14 chr2:33241400-33247000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr2:33241400-33247000 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr2:33241600-33246800 Weak transcription Osteobl bone
17 chr2:33241800-33247600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr2:33241800-33248000 Weak transcription Duodenum Mucosa Duodenum
19 chr2:33241800-33248600 Weak transcription Small Intestine intestine
20 chr2:33241800-33248600 Weak transcription Stomach Mucosa stomach
21 chr2:33241800-33249600 Weak transcription Fetal Muscle Leg muscle
22 chr2:33242200-33249600 Weak transcription Liver Liver
23 chr2:33242600-33248600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr2:33242600-33249600 Weak transcription Right Ventricle heart
25 chr2:33243800-33246000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr2:33243800-33246000 Weak transcription Right Atrium heart
27 chr2:33244000-33248600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr2:33244000-33249800 Weak transcription Left Ventricle heart
29 chr2:33244200-33246000 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr2:33244200-33246800 Weak transcription HSMMtube muscle
31 chr2:33244400-33246800 Weak transcription NHDF-Ad bronchial
32 chr2:33244800-33247600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:33245400-33246000 Enhancers K562 blood
34 chr2:33245600-33247200 Enhancers Fetal Intestine Small intestine
35 chr2:33245800-33246000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr2:33245800-33246000 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr2:33245800-33246200 Active TSS Brain Substantia Nigra brain
38 chr2:33245800-33246400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr2:33245800-33246400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr2:33245800-33246400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
41 chr2:33245800-33246400 Enhancers Fetal Intestine Large intestine
42 chr2:33245800-33246600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr2:33245800-33247000 Enhancers iPS-18 Cell Line embryonic stem cell
44 chr2:33245800-33247000 Enhancers iPS-20b Cell Line embryonic stem cell
45 chr2:33245800-33247200 Enhancers HUES6 Cell Line embryonic stem cell
46 chr2:33245800-33247400 Enhancers HUES48 Cell Line embryonic stem cell
47 chr2:33245800-33247400 Enhancers Cortex derived primary cultured neurospheres brain
48 chr2:33245800-33247600 Enhancers HUES64 Cell Line embryonic stem cell
49 chr2:33245800-33247600 Flanking Active TSS HUVEC blood vessel
50 chr2:33245800-33248000 Enhancers A549 lung

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