The 2.0 version of rSNPBase

Variant report

Variant rs173966
Chromosome Location chr5:114910423-114910424
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:114901400-114922400 Weak transcription Fetal Muscle Leg muscle
2 chr5:114902400-114911200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:114904800-114911200 Weak transcription HSMMtube muscle
4 chr5:114906200-114910600 Enhancers Cortex derived primary cultured neurospheres brain
5 chr5:114907600-114911000 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr5:114907800-114918200 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr5:114908200-114911000 Enhancers HUVEC blood vessel
8 chr5:114908200-114918600 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr5:114908400-114911200 Enhancers Muscle Satellite Cultured Cells --
10 chr5:114908400-114912400 Enhancers NHDF-Ad bronchial
11 chr5:114908600-114912200 Enhancers Osteobl bone
12 chr5:114908800-114911600 Enhancers GM12878-XiMat blood
13 chr5:114908800-114915200 Weak transcription Brain Cingulate Gyrus brain
14 chr5:114908800-114918600 Weak transcription Brain Inferior Temporal Lobe brain
15 chr5:114909000-114911200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr5:114909000-114911200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:114909000-114911200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr5:114909000-114914400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:114909000-114914400 Weak transcription Brain Hippocampus Middle brain
20 chr5:114909000-114914600 Weak transcription Brain Anterior Caudate brain
21 chr5:114909000-114914800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr5:114909000-114918800 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr5:114909000-114919200 Weak transcription Left Ventricle heart
24 chr5:114909000-114919200 Weak transcription Psoas Muscle Psoas
25 chr5:114909200-114911000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr5:114909200-114911200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr5:114909200-114912800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:114909400-114911200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:114909600-114911000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr5:114909800-114911000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr5:114910000-114911000 Weak transcription NHLF lung
32 chr5:114910200-114911200 Enhancers Primary B cells from peripheral blood blood
33 chr5:114910200-114912200 Enhancers NHEK skin
34 chr5:114910200-114918400 Weak transcription Fetal Intestine Large intestine
35 chr5:114910400-114910600 Enhancers HSMM muscle
36 chr5:114910400-114910800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr5:114910400-114910800 Weak transcription NH-A brain
38 chr5:114910400-114914400 Weak transcription Brain Substantia Nigra brain
39 chr5:114910400-114914600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr5:114910400-114925200 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr5:114910400-114929400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015