Variant report

Variant	rs17396919
Chromosome Location	chr13:51242406-51242407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11617990	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12853149	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1641299	0.83[EUR][1000 genomes]
rs17396905	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2540525	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71436234	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71436235	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71436236	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71436237	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs797538	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51237400-51245200	Weak transcription	Osteobl	bone
2	chr13:51241000-51245600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:51241400-51245200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:51241400-51245600	Enhancers	Fetal Thymus	thymus
5	chr13:51241400-51249800	Weak transcription	Right Ventricle	heart
6	chr13:51241600-51244800	Enhancers	Thymus	Thymus
7	chr13:51242000-51242800	Weak transcription	Brain Anterior Caudate	brain
8	chr13:51242000-51243400	Enhancers	Brain Hippocampus Middle	brain
9	chr13:51242000-51244200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr13:51242000-51244200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr13:51242000-51245800	Enhancers	Fetal Muscle Leg	muscle
12	chr13:51242200-51242600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr13:51242200-51243400	Enhancers	Brain Cingulate Gyrus	brain
14	chr13:51242200-51243600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr13:51242200-51243800	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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