Variant report

Variant	rs71436237
Chromosome Location	chr13:51252064-51252065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51218577..51220101-chr13:51250986..51253553,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11617990	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12853149	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1641299	0.82[EUR][1000 genomes]
rs17396905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17396919	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2540525	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71436234	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71436235	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71436236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs797538	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51244800-51258200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr13:51246600-51253600	Enhancers	Fetal Thymus	thymus
3	chr13:51247400-51260200	Weak transcription	HepG2	liver
4	chr13:51248000-51253400	Enhancers	Thymus	Thymus
5	chr13:51249600-51253400	Enhancers	Right Atrium	heart
6	chr13:51249800-51252200	Enhancers	Left Ventricle	heart
7	chr13:51249800-51253400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:51249800-51253400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr13:51249800-51253400	Enhancers	Fetal Muscle Leg	muscle
10	chr13:51250000-51252600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:51250000-51252800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr13:51250000-51252800	Enhancers	Fetal Lung	lung
13	chr13:51250000-51252800	Enhancers	HSMM	muscle
14	chr13:51250000-51253400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr13:51250000-51255200	Enhancers	Osteobl	bone
16	chr13:51250000-51256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:51250200-51252400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:51250200-51252400	Enhancers	NH-A	brain
19	chr13:51250200-51252800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:51250200-51252800	Enhancers	Dnd41	blood
21	chr13:51250200-51254000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:51250200-51254400	Enhancers	HSMMtube	muscle
23	chr13:51250400-51252400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr13:51250400-51253400	Enhancers	K562	blood
25	chr13:51250400-51253600	Enhancers	NHDF-Ad	bronchial
26	chr13:51250400-51254000	Enhancers	HMEC	breast
27	chr13:51250400-51254400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:51250400-51258400	Weak transcription	Psoas Muscle	Psoas
29	chr13:51250600-51252200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr13:51250600-51252200	Enhancers	Brain Anterior Caudate	brain
31	chr13:51250600-51252200	Enhancers	Brain Substantia Nigra	brain
32	chr13:51250600-51252400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:51250600-51252400	Enhancers	NHEK	skin
34	chr13:51250600-51253400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:51250600-51253400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:51250600-51253400	Enhancers	NHLF	lung
37	chr13:51250600-51254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:51250600-51254000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:51250600-51254200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:51250600-51254800	Enhancers	Fetal Heart	heart
41	chr13:51250800-51252800	Enhancers	Fetal Stomach	stomach
42	chr13:51250800-51253000	Enhancers	Brain Germinal Matrix	brain
43	chr13:51251000-51253000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr13:51251000-51253400	Enhancers	Esophagus	oesophagus
45	chr13:51251400-51252200	Enhancers	Pancreas	Pancrea
46	chr13:51251400-51252400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:51251400-51252400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr13:51251400-51252600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:51251400-51261000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr13:51251400-51265600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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