Variant report

Variant	rs1740115
Chromosome Location	chr1:55994533-55994534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1078877	0.80[EUR][1000 genomes]
rs2649629	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55989800-55996000	Weak transcription	Fetal Intestine Large	intestine
2	chr1:55991800-55996200	Enhancers	HepG2	liver
3	chr1:55993600-55994600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:55994200-55995200	Enhancers	Fetal Kidney	kidney
5	chr1:55994200-55996600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:55994400-55994600	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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