Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1695939	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1695942	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695943	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695955	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695956	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695957	0.82[EUR][1000 genomes]
rs1695958	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1695959	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695960	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1740115	0.80[EUR][1000 genomes]
rs1740117	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1740118	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1740119	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1740121	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1740122	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1740123	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1740126	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17418899	0.85[CHB][hapmap]
rs1780534	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1780535	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1780537	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2649627	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2649629	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs2748703	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2800840	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55987400-55990600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:55987600-55990800	Enhancers	HepG2	liver
3	chr1:55988000-55990600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:55988400-55990600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:55988800-55989800	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:55988800-55989800	Enhancers	Fetal Intestine Small	intestine
7	chr1:55988800-55989800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:55988800-55990800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:55989000-55990400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr1:55989400-55989800	Enhancers	Fetal Intestine Large	intestine
11	chr1:55989600-55990600	Weak transcription	Colonic Mucosa	Colon

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