Variant report

Variant	rs1780534
Chromosome Location	chr1:55978480-55978481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:55970974..55974627-chr1:55975213..55978660,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1078877	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1695937	0.81[EUR][1000 genomes]
rs1695939	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695942	0.85[EUR][1000 genomes]
rs1695943	0.85[EUR][1000 genomes]
rs1695955	0.85[EUR][1000 genomes]
rs1695956	0.85[EUR][1000 genomes]
rs1695957	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1695958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1695959	0.85[EUR][1000 genomes]
rs1695960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1740117	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1740118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1740119	0.85[EUR][1000 genomes]
rs1740120	0.81[EUR][1000 genomes]
rs1740121	0.85[EUR][1000 genomes]
rs1740122	0.89[EUR][1000 genomes]
rs1740123	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1740126	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780524	0.81[EUR][1000 genomes]
rs1780526	0.87[ASN][1000 genomes]
rs1780535	0.85[EUR][1000 genomes]
rs1780537	0.85[EUR][1000 genomes]
rs1980549	0.87[ASN][1000 genomes]
rs2649627	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2649629	0.80[ASN][1000 genomes]
rs2748703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2800838	0.87[ASN][1000 genomes]
rs2800840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4325177	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55970600-55978800	Weak transcription	Aorta	Aorta
2	chr1:55972800-55980000	Weak transcription	Fetal Kidney	kidney
3	chr1:55974400-55979200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:55975800-55985600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:55976200-55978800	Enhancers	Fetal Stomach	stomach
6	chr1:55978400-55978600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links