Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1078877	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1695942	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1695943	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1695955	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1695956	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1695957	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1695958	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1695959	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1695960	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1740118	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1740119	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1740120	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1740121	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1740122	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1780534	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1780535	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1780536	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1780537	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2133555	0.91[EUR][1000 genomes]
rs2649627	0.82[EUR][1000 genomes]
rs2748703	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2800840	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55982000-55987600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:55982800-55987400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:55985200-55988200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:55985600-55988200	Weak transcription	Gastric	stomach
5	chr1:55986000-55987400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:55986200-55988400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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