Variant report

Variant	rs2133555
Chromosome Location	chr1:55984309-55984310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1695942	0.90[EUR][1000 genomes]
rs1695943	0.90[EUR][1000 genomes]
rs1695955	0.90[EUR][1000 genomes]
rs1695956	0.90[EUR][1000 genomes]
rs1695957	0.90[EUR][1000 genomes]
rs1695959	0.90[EUR][1000 genomes]
rs1740117	0.91[EUR][1000 genomes]
rs1740119	0.90[EUR][1000 genomes]
rs1740120	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1740121	0.90[EUR][1000 genomes]
rs1740122	0.83[EUR][1000 genomes]
rs1780535	0.90[EUR][1000 genomes]
rs1780536	0.81[EUR][1000 genomes]
rs1780537	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55975800-55985600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:55980800-55985800	Weak transcription	Fetal Kidney	kidney
3	chr1:55981200-55986000	Weak transcription	Fetal Stomach	stomach
4	chr1:55982000-55987600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:55982200-55986200	Enhancers	Placenta	Placenta
6	chr1:55982800-55987400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:55983600-55985200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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