Variant report

Variant	rs1780524
Chromosome Location	chr1:55966597-55966598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1165390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1165391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695939	0.94[EUR][1000 genomes]
rs1695958	0.81[EUR][1000 genomes]
rs1740118	0.81[EUR][1000 genomes]
rs1740120	0.87[AMR][1000 genomes]
rs1740123	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1740126	0.94[EUR][1000 genomes]
rs1780520	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1780526	0.89[EUR][1000 genomes]
rs1780534	0.81[EUR][1000 genomes]
rs1980549	0.90[EUR][1000 genomes]
rs2800838	0.90[EUR][1000 genomes]
rs4325177	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55965800-55967000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:55965800-55968200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:55966200-55966600	Enhancers	NHLF	lung
4	chr1:55966200-55967200	Enhancers	NHDF-Ad	bronchial
5	chr1:55966400-55967000	Enhancers	Thymus	Thymus
6	chr1:55966400-55974000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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