Variant report

Variant	rs1780526
Chromosome Location	chr1:55948478-55948479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1165390	0.88[EUR][1000 genomes]
rs1165391	0.88[EUR][1000 genomes]
rs1695937	0.89[EUR][1000 genomes]
rs1695939	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1695958	0.82[ASN][1000 genomes]
rs1695960	0.82[ASN][1000 genomes]
rs1740118	0.82[ASN][1000 genomes]
rs1740123	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1740126	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1780520	0.92[EUR][1000 genomes]
rs1780524	0.89[EUR][1000 genomes]
rs1780534	0.87[ASN][1000 genomes]
rs1980549	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649629	0.86[CHB][hapmap];0.85[GIH][hapmap]
rs2748703	0.82[ASN][1000 genomes]
rs2800838	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800840	0.82[ASN][1000 genomes]
rs4325177	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55940000-55950000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:55944200-55950600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:55945000-55950200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:55945200-55950000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:55946800-55950000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:55947000-55955200	Weak transcription	HSMM	muscle
7	chr1:55947400-55950600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:55947400-55956200	Weak transcription	Osteobl	bone
9	chr1:55947600-55949800	Weak transcription	NHDF-Ad	bronchial
10	chr1:55947800-55956000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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