Variant report
| Variant | rs1740126 |
|---|---|
| Chromosome Location | chr1:55958106-55958107 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:55954425..55957067-chr1:55957952..55959735,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1078877 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1165390 | 0.95[EUR][1000 genomes] |
| rs1165391 | 0.95[EUR][1000 genomes] |
| rs1695937 | 0.94[EUR][1000 genomes] |
| rs1695939 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1695958 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1695960 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1740118 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1740123 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1780520 | 0.92[EUR][1000 genomes] |
| rs1780524 | 0.94[EUR][1000 genomes] |
| rs1780526 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1780534 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1980549 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2649627 | 0.81[ASN][1000 genomes] |
| rs2649629 | 0.80[ASN][1000 genomes] |
| rs2748703 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2800838 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2800840 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4325177 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv10184 | chr1:55728755-56084833 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008241 | chr1:55922008-55972596 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:55958000-55958200 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
