Variant report

Variant	rs17404345
Chromosome Location	chr12:119917880-119917881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119608797..119609566-chr12:119917639..119918162,2	MCF-7	breast:
2	chr12:119614742..119619324-chr12:119914452..119918204,4	MCF-7	breast:
3	chr12:119882836..119888025-chr12:119914651..119920477,9	MCF-7	breast:
4	chr12:119915459..119919519-chr12:119922678..119926603,4	MCF-7	breast:
5	chr12:119608735..119609683-chr12:119917365..119918631,5	MCF-7	breast:
6	chr12:119608735..119609705-chr12:119917084..119918539,5	MCF-7	breast:
7	chr12:119917727..119918526-chr12:119981821..119982376,2	MCF-7	breast:
8	chr12:119883274..119886371-chr12:119915842..119918823,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12099618	0.84[AMR][1000 genomes]
rs12297270	0.80[AMR][1000 genomes]
rs12322169	0.80[AMR][1000 genomes]
rs12322291	0.80[AMR][1000 genomes]
rs17482376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293495	0.80[AMR][1000 genomes]
rs4767822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61938079	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61938115	0.90[AMR][1000 genomes]
rs61938117	0.82[AMR][1000 genomes]
rs7304132	0.90[AMR][1000 genomes]
rs7967638	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3362333	chr12:119916369-119920867	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3407653	chr12:119917169-119920167	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119916800-119918800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:119917400-119924600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:119917600-119918000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:119917600-119918200	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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