Variant report
| Variant | rs61938115 |
|---|---|
| Chromosome Location | chr12:119915056-119915057 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:119614742..119619324-chr12:119914452..119918204,4 | MCF-7 | breast: | |
| 2 | chr12:119882188..119882826-chr12:119914636..119915142,2 | MCF-7 | breast: | |
| 3 | chr12:119882836..119888025-chr12:119914651..119920477,9 | MCF-7 | breast: | |
| 4 | chr12:119913085..119915232-chr12:119915354..119917050,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000152137 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11064799 | 0.83[EUR][1000 genomes] |
| rs12099618 | 0.81[EUR][1000 genomes] |
| rs12297032 | 0.83[EUR][1000 genomes] |
| rs12297270 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12322169 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12322291 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1464374 | 0.89[EUR][1000 genomes] |
| rs17404345 | 0.90[AMR][1000 genomes] |
| rs17482376 | 0.90[AMR][1000 genomes] |
| rs2293495 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4767822 | 0.90[AMR][1000 genomes] |
| rs61938079 | 0.85[AMR][1000 genomes] |
| rs61938109 | 0.83[EUR][1000 genomes] |
| rs61938117 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7304132 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7967638 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047036 | chr12:119477583-119992640 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv916688 | chr12:119801814-120044407 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv832529 | chr12:119863378-120071646 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
