Variant report

Variant	rs17411047
Chromosome Location	chr10:45201663-45201664
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45201624..45204188-chr10:45255999..45258220,2	MCF-7	breast:
2	chr10:45194571..45197405-chr10:45201059..45202685,2	K562	blood:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10793555	0.91[EUR][1000 genomes]
rs10900101	0.83[EUR][1000 genomes]
rs10900102	0.87[EUR][1000 genomes]
rs10900106	0.89[EUR][1000 genomes]
rs10900108	1.00[ASN][1000 genomes]
rs10900114	1.00[ASN][1000 genomes]
rs10900115	1.00[ASN][1000 genomes]
rs10900116	1.00[ASN][1000 genomes]
rs10900117	1.00[ASN][1000 genomes]
rs10900118	1.00[ASN][1000 genomes]
rs10900119	1.00[ASN][1000 genomes]
rs11239199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239239	1.00[ASN][1000 genomes]
rs11239240	1.00[ASN][1000 genomes]
rs11239242	1.00[ASN][1000 genomes]
rs11239245	1.00[ASN][1000 genomes]
rs11239246	1.00[ASN][1000 genomes]
rs11239248	1.00[ASN][1000 genomes]
rs11239251	1.00[ASN][1000 genomes]
rs11239254	1.00[ASN][1000 genomes]
rs11239255	1.00[ASN][1000 genomes]
rs11239256	1.00[ASN][1000 genomes]
rs11239258	1.00[ASN][1000 genomes]
rs11239259	1.00[ASN][1000 genomes]
rs11239263	1.00[ASN][1000 genomes]
rs11239264	1.00[ASN][1000 genomes]
rs11591579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592342	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593530	1.00[ASN][1000 genomes]
rs11594847	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11595568	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596589	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597029	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597131	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598037	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598433	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598611	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598952	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812151	1.00[ASN][1000 genomes]
rs11812387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813028	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813823	1.00[ASN][1000 genomes]
rs11815268	1.00[ASN][1000 genomes]
rs11815663	1.00[ASN][1000 genomes]
rs11817455	1.00[ASN][1000 genomes]
rs11818158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818379	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819599	1.00[ASN][1000 genomes]
rs11819624	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819716	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146205	1.00[ASN][1000 genomes]
rs12357368	1.00[ASN][1000 genomes]
rs1253325	1.00[ASN][1000 genomes]
rs1325160	1.00[ASN][1000 genomes]
rs1325163	0.89[EUR][1000 genomes]
rs1383373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480597	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1480604	0.88[EUR][1000 genomes]
rs1590559	1.00[ASN][1000 genomes]
rs1600615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157056	1.00[ASN][1000 genomes]
rs17410010	1.00[ASN][1000 genomes]
rs17410452	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17411958	1.00[ASN][1000 genomes]
rs17414426	1.00[ASN][1000 genomes]
rs17488358	1.00[ASN][1000 genomes]
rs1749325	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1749327	1.00[ASN][1000 genomes]
rs1749331	1.00[ASN][1000 genomes]
rs1749333	1.00[ASN][1000 genomes]
rs17501987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502384	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502724	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1771981	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1771985	1.00[ASN][1000 genomes]
rs1771990	1.00[ASN][1000 genomes]
rs1771996	1.00[ASN][1000 genomes]
rs1771999	1.00[ASN][1000 genomes]
rs1831671	1.00[ASN][1000 genomes]
rs1947860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977325	1.00[ASN][1000 genomes]
rs1977326	1.00[ASN][1000 genomes]
rs1994003	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094018	1.00[ASN][1000 genomes]
rs2101070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2477528	1.00[ASN][1000 genomes]
rs2477529	1.00[ASN][1000 genomes]
rs2611373	1.00[ASN][1000 genomes]
rs2611374	1.00[ASN][1000 genomes]
rs2611375	1.00[ASN][1000 genomes]
rs2764349	1.00[ASN][1000 genomes]
rs2764350	1.00[ASN][1000 genomes]
rs2764351	1.00[ASN][1000 genomes]
rs2764361	1.00[ASN][1000 genomes]
rs2793295	1.00[ASN][1000 genomes]
rs2793297	1.00[ASN][1000 genomes]
rs2793298	1.00[ASN][1000 genomes]
rs2793299	1.00[ASN][1000 genomes]
rs2793301	1.00[ASN][1000 genomes]
rs2793305	1.00[ASN][1000 genomes]
rs2793308	1.00[ASN][1000 genomes]
rs2793311	1.00[ASN][1000 genomes]
rs2793312	1.00[CHB][hapmap]
rs34660870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250498	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363088	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737306	0.89[EUR][1000 genomes]
rs3890283	1.00[ASN][1000 genomes]
rs4035631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362097	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4363543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4363544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070868	0.90[EUR][1000 genomes]
rs7088026	0.91[EUR][1000 genomes]
rs74138464	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895327	0.90[EUR][1000 genomes]
rs7901009	1.00[ASN][1000 genomes]
rs7911712	1.00[ASN][1000 genomes]
rs7912668	1.00[ASN][1000 genomes]
rs967989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2750893	chr10:45195185-45356594	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039167	chr10:45195541-45357798	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046534	chr10:45196274-45357798	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv870344	chr10:45201522-45366921	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45198400-45201800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:45199000-45202600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:45199200-45204400	Enhancers	HSMMtube	muscle
4	chr10:45199600-45202000	Weak transcription	NHLF	lung
5	chr10:45199800-45201800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:45200000-45201800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:45200000-45202000	Weak transcription	HMEC	breast
8	chr10:45200000-45202200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:45200200-45202400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:45200800-45203200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:45201000-45203800	Enhancers	HSMM	muscle
12	chr10:45201000-45204400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:45201200-45204400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:45201400-45203400	Enhancers	Osteobl	bone
15	chr10:45201400-45204400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:45201600-45202000	Enhancers	NH-A	brain
17	chr10:45201600-45202200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:45201600-45203600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:45201600-45204200	Enhancers	NHDF-Ad	bronchial

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