Variant report

Variant	rs17488358
Chromosome Location	chr10:45153379-45153380
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10900108	1.00[ASN][1000 genomes]
rs10900114	1.00[ASN][1000 genomes]
rs10900115	1.00[ASN][1000 genomes]
rs10900116	1.00[ASN][1000 genomes]
rs10900117	1.00[ASN][1000 genomes]
rs10900118	1.00[ASN][1000 genomes]
rs10900119	1.00[ASN][1000 genomes]
rs11239199	1.00[ASN][1000 genomes]
rs11239239	1.00[ASN][1000 genomes]
rs11239240	1.00[ASN][1000 genomes]
rs11239242	1.00[ASN][1000 genomes]
rs11239245	1.00[ASN][1000 genomes]
rs11239246	1.00[ASN][1000 genomes]
rs11239248	1.00[ASN][1000 genomes]
rs11239251	1.00[ASN][1000 genomes]
rs11239254	1.00[ASN][1000 genomes]
rs11239255	1.00[ASN][1000 genomes]
rs11239256	1.00[ASN][1000 genomes]
rs11239258	1.00[ASN][1000 genomes]
rs11239259	1.00[ASN][1000 genomes]
rs11591579	1.00[ASN][1000 genomes]
rs11592342	1.00[ASN][1000 genomes]
rs11593530	1.00[ASN][1000 genomes]
rs11595568	1.00[ASN][1000 genomes]
rs11596087	1.00[ASN][1000 genomes]
rs11596156	1.00[ASN][1000 genomes]
rs11596531	1.00[ASN][1000 genomes]
rs11596589	1.00[ASN][1000 genomes]
rs11596593	1.00[ASN][1000 genomes]
rs11597029	1.00[ASN][1000 genomes]
rs11597131	1.00[ASN][1000 genomes]
rs11598037	1.00[ASN][1000 genomes]
rs11598421	1.00[ASN][1000 genomes]
rs11598433	1.00[ASN][1000 genomes]
rs11598611	1.00[ASN][1000 genomes]
rs11598612	1.00[ASN][1000 genomes]
rs11598952	1.00[ASN][1000 genomes]
rs11812151	1.00[ASN][1000 genomes]
rs11812387	1.00[ASN][1000 genomes]
rs11813028	1.00[ASN][1000 genomes]
rs11813782	1.00[ASN][1000 genomes]
rs11813823	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815268	1.00[ASN][1000 genomes]
rs11815663	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818158	1.00[ASN][1000 genomes]
rs11818379	1.00[ASN][1000 genomes]
rs11819599	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11819624	1.00[ASN][1000 genomes]
rs11819716	1.00[ASN][1000 genomes]
rs12146205	1.00[ASN][1000 genomes]
rs12357368	1.00[ASN][1000 genomes]
rs1253325	1.00[ASN][1000 genomes]
rs1325160	1.00[ASN][1000 genomes]
rs1383373	1.00[ASN][1000 genomes]
rs1480596	1.00[ASN][1000 genomes]
rs1480597	1.00[ASN][1000 genomes]
rs1480598	1.00[ASN][1000 genomes]
rs1590559	1.00[ASN][1000 genomes]
rs1600615	1.00[ASN][1000 genomes]
rs17157056	1.00[ASN][1000 genomes]
rs17410010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410452	1.00[ASN][1000 genomes]
rs17411047	1.00[ASN][1000 genomes]
rs17411958	1.00[ASN][1000 genomes]
rs17414426	1.00[ASN][1000 genomes]
rs1749325	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1749327	1.00[ASN][1000 genomes]
rs1749331	1.00[ASN][1000 genomes]
rs1749333	1.00[ASN][1000 genomes]
rs17501987	1.00[ASN][1000 genomes]
rs17502111	1.00[ASN][1000 genomes]
rs17502384	1.00[ASN][1000 genomes]
rs17502724	1.00[ASN][1000 genomes]
rs1771981	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1771985	1.00[ASN][1000 genomes]
rs1771990	1.00[ASN][1000 genomes]
rs1771996	1.00[ASN][1000 genomes]
rs1771999	1.00[ASN][1000 genomes]
rs1831671	1.00[ASN][1000 genomes]
rs1947860	1.00[ASN][1000 genomes]
rs1977325	1.00[ASN][1000 genomes]
rs1977326	1.00[ASN][1000 genomes]
rs1994003	1.00[ASN][1000 genomes]
rs2069045	1.00[ASN][1000 genomes]
rs2086420	1.00[ASN][1000 genomes]
rs2094018	1.00[ASN][1000 genomes]
rs2477528	1.00[ASN][1000 genomes]
rs2477529	1.00[ASN][1000 genomes]
rs2611373	1.00[ASN][1000 genomes]
rs2611374	1.00[ASN][1000 genomes]
rs2611375	1.00[ASN][1000 genomes]
rs2764349	1.00[ASN][1000 genomes]
rs2764350	1.00[ASN][1000 genomes]
rs2764351	1.00[ASN][1000 genomes]
rs2764361	1.00[ASN][1000 genomes]
rs2793295	1.00[ASN][1000 genomes]
rs2793297	1.00[ASN][1000 genomes]
rs2793298	1.00[ASN][1000 genomes]
rs2793299	1.00[ASN][1000 genomes]
rs2793301	1.00[ASN][1000 genomes]
rs2793305	1.00[ASN][1000 genomes]
rs2793308	1.00[ASN][1000 genomes]
rs2793311	1.00[ASN][1000 genomes]
rs2793312	1.00[CHB][hapmap]
rs34660870	1.00[ASN][1000 genomes]
rs35250498	1.00[ASN][1000 genomes]
rs35363088	1.00[ASN][1000 genomes]
rs3890283	1.00[ASN][1000 genomes]
rs4035631	1.00[ASN][1000 genomes]
rs4268462	1.00[ASN][1000 genomes]
rs4356177	1.00[ASN][1000 genomes]
rs4362097	1.00[ASN][1000 genomes]
rs4362098	1.00[ASN][1000 genomes]
rs4363543	1.00[ASN][1000 genomes]
rs4363544	1.00[ASN][1000 genomes]
rs74138464	1.00[ASN][1000 genomes]
rs7901009	1.00[ASN][1000 genomes]
rs7911712	1.00[ASN][1000 genomes]
rs7912668	1.00[ASN][1000 genomes]
rs967989	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45147800-45154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45148000-45155600	Weak transcription	Osteobl	bone
3	chr10:45152400-45154600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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