Variant report

Variant	rs17417539
Chromosome Location	chr4:121786823-121786824
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11944593	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108542	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17051272	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051273	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs186905	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3114954	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3115310	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34371247	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34698926	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35774122	0.83[EUR][1000 genomes]
rs56235391	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323161	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7663276	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7663873	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681598	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687183	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121766200-121790800	Weak transcription	Ovary	ovary
2	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
3	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121780600-121787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:121784600-121791200	Weak transcription	Pancreas	Pancrea
7	chr4:121786000-121787400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:121786000-121787600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:121786200-121787000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:121786200-121788000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:121786400-121787000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:121786400-121788000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:121786400-121788000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:121786600-121787400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr4:121786600-121787400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:121786600-121787400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:121786600-121787400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:121786600-121787600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:121786600-121787600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:121786600-121787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:121786600-121788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:121786600-121788000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:121786600-121788000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr4:121786600-121788200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:121786600-121788200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:121786800-121787000	Enhancers	Fetal Lung	lung
27	chr4:121786800-121787600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:121786800-121787600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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