Variant report

Variant	rs186905
Chromosome Location	chr4:121794072-121794073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11944593	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13108542	0.99[EUR][1000 genomes]
rs17051272	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051273	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17417539	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3114954	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3115310	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34371247	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34698926	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35774122	0.84[EUR][1000 genomes]
rs56235391	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62323161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7663276	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7663873	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7681598	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687183	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:121787600-121796000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:121791400-121795800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121791400-121796000	Weak transcription	NHDF-Ad	bronchial
5	chr4:121791400-121796400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:121791400-121803200	Weak transcription	Fetal Stomach	stomach
7	chr4:121792000-121795200	Weak transcription	Fetal Lung	lung
8	chr4:121792000-121796000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:121792000-121796000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:121792000-121796000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:121792000-121796000	Weak transcription	Ovary	ovary
12	chr4:121792000-121796000	Weak transcription	Pancreas	Pancrea
13	chr4:121792200-121796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:121792400-121800000	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links