Variant report

Variant	rs17422462
Chromosome Location	chr5:119712523-119712524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10052468	1.00[ASN][1000 genomes]
rs1108712	1.00[ASN][1000 genomes]
rs12654459	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12656625	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12656626	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12658673	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12659480	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13435941	1.00[ASN][1000 genomes]
rs1368190	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1432455	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1432462	0.82[EUR][1000 genomes]
rs1503928	0.93[EUR][1000 genomes]
rs17146602	0.94[EUR][1000 genomes]
rs17146632	0.82[EUR][1000 genomes]
rs17421780	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17422211	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17424128	0.82[EUR][1000 genomes]
rs17481046	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17488124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17489056	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17489517	0.82[EUR][1000 genomes]
rs17489671	0.82[EUR][1000 genomes]
rs17489720	0.82[EUR][1000 genomes]
rs1897457	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2053007	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116607	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116608	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2163674	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2897244	1.00[ASN][1000 genomes]
rs4895155	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4895243	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4895244	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56398366	0.82[EUR][1000 genomes]
rs57401201	0.82[EUR][1000 genomes]
rs58699148	0.82[EUR][1000 genomes]
rs58831848	0.82[EUR][1000 genomes]
rs59264625	1.00[ASN][1000 genomes]
rs60249515	0.82[EUR][1000 genomes]
rs61113370	0.80[EUR][1000 genomes]
rs6595233	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6650983	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6884101	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72784167	0.81[EUR][1000 genomes]
rs72784168	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72784169	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72784172	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784173	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784175	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72784183	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784184	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784190	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784191	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784195	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784197	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72784200	0.97[EUR][1000 genomes]
rs72784201	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72784202	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72786208	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72786214	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72786216	0.95[EUR][1000 genomes]
rs72786223	0.95[EUR][1000 genomes]
rs72786224	0.82[EUR][1000 genomes]
rs72786225	0.93[EUR][1000 genomes]
rs72786226	0.93[EUR][1000 genomes]
rs72786229	0.82[EUR][1000 genomes]
rs7713691	1.00[ASN][1000 genomes]
rs7718509	1.00[ASN][1000 genomes]
rs7730105	0.93[EUR][1000 genomes]
rs7734475	0.81[EUR][1000 genomes]
rs9327141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527509	chr5:119697716-119724069	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119705600-119714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119709400-119714200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links