Variant report

Variant	rs13435941
Chromosome Location	chr5:119725946-119725947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036536	0.81[EUR][1000 genomes]
rs10052468	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058597	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10072828	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10478464	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1108712	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109029	0.82[EUR][1000 genomes]
rs13359009	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1347070	0.95[CEU][hapmap]
rs1368182	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1368189	0.95[CEU][hapmap]
rs1368191	0.82[EUR][1000 genomes]
rs1432454	0.81[EUR][1000 genomes]
rs1432456	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1432461	0.82[EUR][1000 genomes]
rs17146501	0.83[EUR][1000 genomes]
rs17422462	1.00[ASN][1000 genomes]
rs2082353	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2082356	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2116606	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2897244	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35399227	0.81[AMR][1000 genomes]
rs4895246	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895247	0.86[EUR][1000 genomes]
rs4895248	0.86[EUR][1000 genomes]
rs4895250	0.81[AMR][1000 genomes]
rs4895253	0.82[EUR][1000 genomes]
rs58274987	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59264625	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595225	0.81[EUR][1000 genomes]
rs6865215	0.95[CEU][hapmap];0.81[AMR][1000 genomes]
rs6896794	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6899092	0.85[EUR][1000 genomes]
rs7701804	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7713691	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714965	0.84[EUR][1000 genomes]
rs7718509	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327141	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327142	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119722400-119726000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:119722800-119727400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:119723400-119726800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:119724000-119726400	Enhancers	Dnd41	blood
5	chr5:119724600-119726000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:119724600-119735200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:119724800-119726000	Weak transcription	HSMM	muscle
8	chr5:119725000-119731800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:119725600-119732000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:119725800-119730800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:119725800-119731400	Weak transcription	NHDF-Ad	bronchial

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