Variant report

Variant	rs10058597
Chromosome Location	chr5:119683684-119683685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10036536	0.87[EUR][1000 genomes]
rs10052468	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10059974	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072828	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1108712	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12654459	0.96[ASN][1000 genomes]
rs12656625	0.96[ASN][1000 genomes]
rs12656626	0.96[ASN][1000 genomes]
rs12657593	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12658673	0.96[ASN][1000 genomes]
rs12659480	0.91[ASN][1000 genomes]
rs13158141	0.83[EUR][1000 genomes]
rs13161485	0.81[EUR][1000 genomes]
rs13171950	0.81[AMR][1000 genomes]
rs13172224	0.81[EUR][1000 genomes]
rs13357775	0.83[EUR][1000 genomes]
rs13435941	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1347070	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs1368182	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1368189	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1368191	0.84[EUR][1000 genomes]
rs1394115	0.81[EUR][1000 genomes]
rs1432454	0.87[EUR][1000 genomes]
rs1432456	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1432458	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1432464	0.82[EUR][1000 genomes]
rs17146485	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17146501	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17421780	0.98[ASN][1000 genomes]
rs17422211	0.91[ASN][1000 genomes]
rs17481046	0.98[ASN][1000 genomes]
rs1835870	0.84[EUR][1000 genomes]
rs1897457	0.91[ASN][1000 genomes]
rs2053007	0.96[ASN][1000 genomes]
rs2082356	0.82[EUR][1000 genomes]
rs2116606	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2116607	0.91[ASN][1000 genomes]
rs2163674	0.96[ASN][1000 genomes]
rs2897244	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35399227	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4499860	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895243	0.91[ASN][1000 genomes]
rs4895244	0.91[ASN][1000 genomes]
rs4895246	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4895247	0.88[EUR][1000 genomes]
rs4895248	0.88[EUR][1000 genomes]
rs4895249	0.86[EUR][1000 genomes]
rs4895250	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58274987	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59264625	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59336675	0.82[EUR][1000 genomes]
rs6595225	0.87[EUR][1000 genomes]
rs6595232	0.82[EUR][1000 genomes]
rs6863052	0.91[ASN][1000 genomes]
rs6863943	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6865215	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6884101	0.91[ASN][1000 genomes]
rs6895493	0.80[EUR][1000 genomes]
rs6896794	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899092	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784167	0.96[ASN][1000 genomes]
rs72784168	0.98[ASN][1000 genomes]
rs72784169	0.98[ASN][1000 genomes]
rs72784172	0.91[ASN][1000 genomes]
rs72784173	0.91[ASN][1000 genomes]
rs72784175	0.91[ASN][1000 genomes]
rs72784177	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs753641	0.82[EUR][1000 genomes]
rs7713691	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7714965	0.90[EUR][1000 genomes]
rs7718509	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7727978	0.81[EUR][1000 genomes]
rs9327141	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs982827	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119680400-119686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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