Variant report

Variant	rs13172224
Chromosome Location	chr5:119737294-119737295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10036536	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10052468	0.84[EUR][1000 genomes]
rs10058597	0.81[EUR][1000 genomes]
rs10059974	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10072828	0.83[EUR][1000 genomes]
rs1108712	0.83[EUR][1000 genomes]
rs13158141	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161485	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171950	1.00[ASN][1000 genomes]
rs13357775	0.82[EUR][1000 genomes]
rs1347070	0.81[EUR][1000 genomes]
rs1368182	0.81[EUR][1000 genomes]
rs1368189	0.83[EUR][1000 genomes]
rs1368191	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1432454	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1432456	0.82[EUR][1000 genomes]
rs1432457	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432458	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1432464	0.81[EUR][1000 genomes]
rs17146501	0.86[EUR][1000 genomes]
rs1835870	0.93[EUR][1000 genomes]
rs2082356	0.81[EUR][1000 genomes]
rs2116606	0.85[EUR][1000 genomes]
rs2897244	0.83[EUR][1000 genomes]
rs35399227	0.81[EUR][1000 genomes]
rs4499860	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4895246	0.83[EUR][1000 genomes]
rs4895247	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895248	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895249	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895250	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58274987	0.80[EUR][1000 genomes]
rs59264625	0.86[EUR][1000 genomes]
rs59336675	0.81[EUR][1000 genomes]
rs6595225	0.88[EUR][1000 genomes]
rs6595232	0.81[EUR][1000 genomes]
rs6863943	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6865215	0.81[EUR][1000 genomes]
rs6896794	0.83[EUR][1000 genomes]
rs6899092	0.81[EUR][1000 genomes]
rs72784177	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7379429	0.86[EUR][1000 genomes]
rs753641	0.81[EUR][1000 genomes]
rs7709140	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7713691	0.84[EUR][1000 genomes]
rs7714965	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7718509	0.85[EUR][1000 genomes]
rs7722765	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9327141	0.83[EUR][1000 genomes]
rs982827	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020655	chr5:119729801-119781762	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119735400-119740600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119735800-119744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:119736400-119740200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:119737200-119737400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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