Variant report

Variant	rs7709140
Chromosome Location	chr5:119768224-119768225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10036536	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10052468	0.82[EUR][1000 genomes]
rs10059974	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10072828	0.81[EUR][1000 genomes]
rs10478464	1.00[ASN][1000 genomes]
rs1108712	0.81[EUR][1000 genomes]
rs13158141	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13161485	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13172224	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13357775	0.82[EUR][1000 genomes]
rs1347070	1.00[ASN][1000 genomes]
rs1368189	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368191	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1394115	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432454	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1432456	0.80[EUR][1000 genomes]
rs1432457	0.84[EUR][1000 genomes]
rs1432458	0.87[EUR][1000 genomes]
rs1432464	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146501	0.85[EUR][1000 genomes]
rs17490270	1.00[JPT][hapmap]
rs1835870	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082353	1.00[ASN][1000 genomes]
rs2082356	1.00[ASN][1000 genomes]
rs2116606	0.83[EUR][1000 genomes]
rs2897244	0.81[EUR][1000 genomes]
rs35399227	1.00[ASN][1000 genomes]
rs4499860	0.87[EUR][1000 genomes]
rs4895246	0.81[EUR][1000 genomes]
rs4895247	0.87[EUR][1000 genomes]
rs4895248	0.87[EUR][1000 genomes]
rs4895249	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4895250	0.82[EUR][1000 genomes]
rs59264625	0.84[EUR][1000 genomes]
rs59336675	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595225	0.86[EUR][1000 genomes]
rs6595232	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863943	0.86[EUR][1000 genomes]
rs6865215	1.00[ASN][1000 genomes]
rs6878266	1.00[ASN][1000 genomes]
rs6895493	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896794	0.81[EUR][1000 genomes]
rs72784177	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7379429	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7446731	1.00[ASN][1000 genomes]
rs753641	1.00[ASN][1000 genomes]
rs7701804	1.00[ASN][1000 genomes]
rs7713691	0.82[EUR][1000 genomes]
rs7714965	0.89[EUR][1000 genomes]
rs7718509	0.83[EUR][1000 genomes]
rs7722765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727978	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327141	0.81[EUR][1000 genomes]
rs982827	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020655	chr5:119729801-119781762	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1018100	chr5:119749898-119802014	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119742000-119775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119766800-119775600	Weak transcription	Psoas Muscle	Psoas
3	chr5:119767600-119768400	ZNF genes & repeats	HSMMtube	muscle
4	chr5:119767800-119768600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:119767800-119770200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:119768200-119770800	Enhancers	Skeletal Muscle Male	skeletal muscle

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