Variant report

Variant	rs7379429
Chromosome Location	chr5:119760910-119760911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10036536	0.84[EUR][1000 genomes]
rs13158141	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13161485	0.81[EUR][1000 genomes]
rs13172224	0.86[EUR][1000 genomes]
rs13357775	0.80[EUR][1000 genomes]
rs1432454	0.84[EUR][1000 genomes]
rs1432457	0.81[EUR][1000 genomes]
rs1432464	0.81[EUR][1000 genomes]
rs17146501	0.82[EUR][1000 genomes]
rs1835870	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2116606	0.80[EUR][1000 genomes]
rs4895247	0.84[EUR][1000 genomes]
rs4895248	0.84[EUR][1000 genomes]
rs4895249	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59264625	0.81[EUR][1000 genomes]
rs6595225	0.84[EUR][1000 genomes]
rs6595232	0.81[EUR][1000 genomes]
rs7709140	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7714965	0.86[EUR][1000 genomes]
rs7718509	0.81[EUR][1000 genomes]
rs7722765	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs982827	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020655	chr5:119729801-119781762	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1018100	chr5:119749898-119802014	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119742000-119775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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