Variant report

Variant	rs1368182
Chromosome Location	chr5:119674516-119674517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr5:119674430-119674829	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-718P	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10036536	0.87[EUR][1000 genomes]
rs10052468	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10058597	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10059974	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10072828	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1108712	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12654459	0.91[ASN][1000 genomes]
rs12656625	0.91[ASN][1000 genomes]
rs12656626	0.91[ASN][1000 genomes]
rs12657593	0.89[ASN][1000 genomes]
rs12658673	0.91[ASN][1000 genomes]
rs12659480	0.87[ASN][1000 genomes]
rs13158141	0.83[EUR][1000 genomes]
rs13161485	0.80[EUR][1000 genomes]
rs13172224	0.81[EUR][1000 genomes]
rs13357775	0.82[EUR][1000 genomes]
rs13435941	0.84[EUR][1000 genomes]
rs1347070	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1368189	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1368191	0.84[EUR][1000 genomes]
rs1432454	0.87[EUR][1000 genomes]
rs1432456	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1432458	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1432464	0.81[EUR][1000 genomes]
rs17146485	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17146501	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17421780	0.93[ASN][1000 genomes]
rs17422211	0.87[ASN][1000 genomes]
rs17481046	0.93[ASN][1000 genomes]
rs1835870	0.83[EUR][1000 genomes]
rs1897457	0.87[ASN][1000 genomes]
rs2053007	0.91[ASN][1000 genomes]
rs2082356	0.81[EUR][1000 genomes]
rs2116606	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2116607	0.87[ASN][1000 genomes]
rs2163674	0.91[ASN][1000 genomes]
rs2897244	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35399227	0.81[EUR][1000 genomes]
rs4499860	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895243	0.87[ASN][1000 genomes]
rs4895244	0.87[ASN][1000 genomes]
rs4895246	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4895247	0.88[EUR][1000 genomes]
rs4895248	0.88[EUR][1000 genomes]
rs4895249	0.86[EUR][1000 genomes]
rs4895250	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58274987	0.89[EUR][1000 genomes]
rs59264625	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59336675	0.80[EUR][1000 genomes]
rs6595225	0.87[EUR][1000 genomes]
rs6595232	0.81[EUR][1000 genomes]
rs6863052	0.87[ASN][1000 genomes]
rs6863943	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6865215	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6884101	0.87[ASN][1000 genomes]
rs6896794	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6899092	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72784167	0.91[ASN][1000 genomes]
rs72784168	0.93[ASN][1000 genomes]
rs72784169	0.93[ASN][1000 genomes]
rs72784172	0.87[ASN][1000 genomes]
rs72784173	0.87[ASN][1000 genomes]
rs72784175	0.87[ASN][1000 genomes]
rs72784177	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs753641	0.82[EUR][1000 genomes]
rs7713691	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7714965	0.90[EUR][1000 genomes]
rs7718509	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9327141	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs982827	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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