Variant report

Variant	rs6863052
Chromosome Location	chr5:119686188-119686189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10058597	0.91[ASN][1000 genomes]
rs10059974	0.87[ASN][1000 genomes]
rs12654459	0.91[ASN][1000 genomes]
rs12656625	0.91[ASN][1000 genomes]
rs12656626	0.91[ASN][1000 genomes]
rs12657593	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12658673	0.91[ASN][1000 genomes]
rs12659480	0.87[ASN][1000 genomes]
rs1368182	0.87[ASN][1000 genomes]
rs1432458	0.87[ASN][1000 genomes]
rs17146485	0.91[ASN][1000 genomes]
rs17146501	0.94[ASN][1000 genomes]
rs17421780	0.89[ASN][1000 genomes]
rs17422211	0.87[ASN][1000 genomes]
rs17481046	0.89[ASN][1000 genomes]
rs1897457	0.87[ASN][1000 genomes]
rs2053007	0.91[ASN][1000 genomes]
rs2116607	0.87[ASN][1000 genomes]
rs2163674	0.91[ASN][1000 genomes]
rs2973133	0.82[AFR][1000 genomes]
rs4499860	0.87[ASN][1000 genomes]
rs4895243	0.87[ASN][1000 genomes]
rs4895244	0.87[ASN][1000 genomes]
rs4895254	0.83[CEU][hapmap]
rs6862601	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6863943	0.87[ASN][1000 genomes]
rs6884101	0.87[ASN][1000 genomes]
rs6896794	0.89[ASN][1000 genomes]
rs6899092	0.91[ASN][1000 genomes]
rs72784167	0.91[ASN][1000 genomes]
rs72784168	0.89[ASN][1000 genomes]
rs72784169	0.89[ASN][1000 genomes]
rs72784172	0.87[ASN][1000 genomes]
rs72784173	0.87[ASN][1000 genomes]
rs72784175	0.87[ASN][1000 genomes]
rs72784177	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119680400-119686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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