Variant report

Variant	rs17426
Chromosome Location	chrX:153609616-153609617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12007167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2070816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2070822	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2239470	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2872817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4446899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4898478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945185	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs5945413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs5945423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs915943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531227	chrX:152864376-153655730	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	esv33199	chrX:152864376-153820241	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
3	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
4	nsv932632	chrX:153333946-153623000	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv531232	chrX:153333946-153626120	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv531233	chrX:153333946-153626120	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv523072	chrX:153333946-153626738	Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
8	nsv915605	chrX:153333946-153783638	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
9	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
10	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
11	nsv9999	chrX:153567427-153621413	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
12	nsv532963	chrX:153576890-153822717	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	195 gene(s)	inside rSNPs	diseases
13	nsv817569	chrX:153592317-153634020	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153606200-153610000	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chrX:153606200-153610000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chrX:153608200-153613400	ZNF genes & repeats	Fetal Stomach	stomach
4	chrX:153608400-153610000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
5	chrX:153608600-153610000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:153608600-153611400	Weak transcription	Small Intestine	intestine
7	chrX:153608800-153609800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chrX:153608800-153610000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
9	chrX:153608800-153610400	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
10	chrX:153608800-153610400	Weak transcription	Fetal Kidney	kidney
11	chrX:153608800-153612800	Weak transcription	Fetal Lung	lung
12	chrX:153609000-153610000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chrX:153609000-153610200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chrX:153609000-153610400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chrX:153609000-153612200	Weak transcription	Brain Cingulate Gyrus	brain
16	chrX:153609000-153612400	Weak transcription	Ovary	ovary
17	chrX:153609000-153612800	Weak transcription	Brain Substantia Nigra	brain
18	chrX:153609000-153612800	Weak transcription	Psoas Muscle	Psoas
19	chrX:153609000-153612800	Weak transcription	Right Atrium	heart
20	chrX:153609000-153618600	Weak transcription	Thymus	Thymus
21	chrX:153609200-153610000	Enhancers	NH-A	brain
22	chrX:153609200-153610400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chrX:153609200-153610400	Strong transcription	NHEK	skin
24	chrX:153609200-153611200	Strong transcription	Osteobl	bone
25	chrX:153609200-153612000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chrX:153609200-153612000	Weak transcription	Stomach Mucosa	stomach
27	chrX:153609200-153612600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chrX:153609200-153612800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chrX:153609200-153612800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chrX:153609200-153612800	Weak transcription	Primary B cells from cord blood	blood
31	chrX:153609200-153612800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chrX:153609200-153612800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chrX:153609200-153612800	Weak transcription	Left Ventricle	heart
34	chrX:153609200-153613000	Weak transcription	Primary T cells from cord blood	blood
35	chrX:153609200-153613000	Weak transcription	Brain Angular Gyrus	brain
36	chrX:153609400-153609800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chrX:153609400-153609800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chrX:153609400-153609800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chrX:153609400-153609800	Strong transcription	Brain Anterior Caudate	brain
40	chrX:153609400-153609800	Weak transcription	Spleen	Spleen
41	chrX:153609400-153610000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chrX:153609400-153610000	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chrX:153609400-153610000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chrX:153609400-153610000	Genic enhancers	A549	lung
45	chrX:153609400-153610200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chrX:153609400-153610200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chrX:153609400-153610200	Strong transcription	Fetal Intestine Large	intestine
48	chrX:153609400-153610200	Enhancers	Hela-S3	cervix
49	chrX:153609400-153610400	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chrX:153609400-153610400	Strong transcription	Primary T cells fromperipheralblood	blood

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