Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10493224	0.83[CHB][hapmap]
rs12044787	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs17115788	0.83[CHB][hapmap]
rs17115791	0.83[CHB][hapmap]
rs17115796	0.83[CHB][hapmap]
rs17115804	0.92[CHB][hapmap]
rs17115807	0.92[CHB][hapmap]
rs17115825	0.91[CHB][hapmap]
rs17115827	0.90[CHB][hapmap]
rs17115830	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs17115832	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs17115833	0.81[ASN][1000 genomes]
rs17115846	0.92[CHB][hapmap]
rs17115851	0.92[CHB][hapmap]
rs17115853	0.92[CHB][hapmap]
rs17115854	0.92[CHB][hapmap]
rs17426569	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2691450	0.83[CHB][hapmap]
rs2805862	0.92[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs2805869	0.87[EUR][1000 genomes]
rs2805870	1.00[CEU][hapmap];0.82[GIH][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs56252125	0.81[ASN][1000 genomes]
rs59252256	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61471583	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74074728	0.80[ASN][1000 genomes]
rs74074729	0.80[ASN][1000 genomes]
rs74074730	0.81[ASN][1000 genomes]
rs9436131	0.92[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57917400-57933800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57927400-57929400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:57927400-57930200	Weak transcription	NHLF	lung
4	chr1:57927400-57930600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: