Variant report

Variant	rs17115807
Chromosome Location	chr1:57921505-57921506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10493224	0.92[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12734724	1.00[CEU][hapmap]
rs17115785	0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17115788	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17115791	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17115796	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17115804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115827	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs17115828	0.87[ASW][hapmap];0.85[MKK][hapmap]
rs17115830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17115832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17115833	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17115846	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs17115851	1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs17115853	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17115854	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17115867	1.00[MEX][hapmap]
rs17115882	1.00[MEX][hapmap]
rs17426569	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs17426688	0.92[CHB][hapmap]
rs2691450	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691463	1.00[CEU][hapmap]
rs2691465	1.00[CEU][hapmap]
rs2793648	1.00[CEU][hapmap]
rs56252125	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59252256	0.80[ASN][1000 genomes]
rs59914221	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61471583	0.81[ASN][1000 genomes]
rs72909294	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72911204	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74074723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074724	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074728	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74074729	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74074730	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74074732	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74074734	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74074736	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74074743	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57917400-57933800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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