Variant report

Variant	rs2691465
Chromosome Location	chr1:57956702-57956703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12734724	1.00[CEU][hapmap]
rs17115796	1.00[CEU][hapmap]
rs17115807	1.00[CEU][hapmap]
rs17115825	1.00[CEU][hapmap]
rs17115830	1.00[CEU][hapmap]
rs17115832	1.00[CEU][hapmap]
rs17115833	1.00[CEU][hapmap]
rs17115867	0.86[CHD][hapmap]
rs2254691	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2691450	1.00[CEU][hapmap]
rs2691463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2691464	0.83[EUR][1000 genomes]
rs2793648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2805862	0.82[CHB][hapmap]
rs9436131	0.82[CHB][hapmap]
rs9436132	0.80[ASN][1000 genomes]
rs9436133	0.83[EUR][1000 genomes]
rs9436544	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57955200-57972800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57955600-57958200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:57955800-57957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:57955800-57957600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:57955800-57958200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:57955800-57958200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:57956000-57957200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:57956000-57957200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:57956000-57957200	Weak transcription	NHLF	lung
10	chr1:57956000-57957400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:57956000-57957600	Weak transcription	Hela-S3	cervix
12	chr1:57956000-57957800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:57956200-57957800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links