Variant report

Variant	rs17427311
Chromosome Location	chr2:172537422-172537423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172535813..172538723-chr2:172541554..172544032,2	MCF-7	breast:
2	chr2:172534391..172539104-chr2:172541690..172546156,5	K562	blood:
3	chr2:172536408..172538619-chr2:172539945..172541778,2	MCF-7	breast:
4	chr2:172528585..172533406-chr2:172536831..172539990,4	K562	blood:

Variant related genes	Relation type
ENSG00000077380	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11673831	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11675404	0.84[AFR][1000 genomes]
rs11675891	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12991441	0.81[AMR][1000 genomes]
rs13016580	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13017695	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13021138	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1554259	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17427473	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17499306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499502	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17848721	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1996424	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2138349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357062	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34108287	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34221876	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34632749	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34962243	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35162284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3770459	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62182397	0.84[AFR][1000 genomes]
rs62184174	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72889853	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74173119	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs979955	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172537400-172538000	Enhancers	K562	blood

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