Variant report

Variant	rs34632749
Chromosome Location	chr2:172596418-172596419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172585739..172588158-chr2:172595691..172597501,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11673831	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11675404	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11675891	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12991441	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13016580	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13017695	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13021138	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13024662	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1554259	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17427311	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17427473	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17499306	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17499502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17848721	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1996424	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2138349	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2357062	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34108287	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34221876	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34962243	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35162284	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3770459	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62182397	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62182402	0.83[AMR][1000 genomes]
rs62184174	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889853	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74173119	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs979955	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv522519	chr2:172586567-172600310	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172545200-172611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:172546600-172602800	Weak transcription	Small Intestine	intestine
3	chr2:172559600-172605200	Weak transcription	Colonic Mucosa	Colon
4	chr2:172561400-172601800	Weak transcription	Fetal Heart	heart
5	chr2:172564200-172610000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr2:172569000-172618600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:172569800-172611400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:172571400-172597800	Strong transcription	HSMM	muscle
9	chr2:172579800-172611200	Strong transcription	Adipose Nuclei	Adipose
10	chr2:172580000-172598000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr2:172580200-172611200	Strong transcription	Placenta	Placenta
12	chr2:172580400-172610600	Strong transcription	Fetal Thymus	thymus
13	chr2:172580400-172611400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:172580400-172611400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:172581200-172601800	Weak transcription	Stomach Mucosa	stomach
16	chr2:172581800-172608600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr2:172581800-172611600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:172584200-172605400	Strong transcription	Fetal Muscle Leg	muscle
19	chr2:172584800-172597200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:172586800-172600600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:172586800-172612000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:172587600-172600000	Weak transcription	Hela-S3	cervix
23	chr2:172587800-172640800	Weak transcription	Psoas Muscle	Psoas
24	chr2:172588400-172598000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:172588400-172601600	Weak transcription	Dnd41	blood
26	chr2:172588400-172601800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr2:172588400-172617000	Weak transcription	Spleen	Spleen
28	chr2:172588400-172617400	Weak transcription	Gastric	stomach
29	chr2:172588400-172619800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:172588600-172600600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr2:172588800-172601600	Weak transcription	Right Ventricle	heart
32	chr2:172588800-172617400	Weak transcription	Pancreas	Pancrea
33	chr2:172589000-172599800	Weak transcription	Esophagus	oesophagus
34	chr2:172589200-172599000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:172589200-172601600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:172589200-172608400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:172589400-172597800	Weak transcription	K562	blood
38	chr2:172589600-172597200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:172589600-172617200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:172589800-172599400	Weak transcription	Fetal Brain Male	brain
41	chr2:172590000-172601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:172591000-172611400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:172591400-172597600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:172591400-172600000	Weak transcription	NHLF	lung
45	chr2:172591800-172606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:172592800-172596800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:172593000-172596800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:172593000-172599200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr2:172593000-172602800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:172593200-172596600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links