Variant report

Variant	rs17429033
Chromosome Location	chr3:111710398-111710399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111697585..111700295-chr3:111709326..111711552,2	K562	blood:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

rs_ID	r²[population]
rs1443078	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs17424897	1.00[CEU][hapmap]
rs17490485	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17490973	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs61403209	0.81[AMR][1000 genomes]
rs62280161	0.84[AMR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111698600-111717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:111698600-111717400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:111698600-111717400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:111698800-111717400	Weak transcription	Colonic Mucosa	Colon
5	chr3:111698800-111717400	Weak transcription	Placenta	Placenta
6	chr3:111698800-111717600	Weak transcription	HSMMtube	muscle
7	chr3:111699000-111717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:111699200-111717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:111699600-111712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:111700000-111715600	Weak transcription	Spleen	Spleen
11	chr3:111700200-111717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:111700200-111717400	Weak transcription	Esophagus	oesophagus
13	chr3:111700200-111717400	Weak transcription	Pancreas	Pancrea
14	chr3:111700200-111717600	Weak transcription	Ovary	ovary
15	chr3:111700800-111711600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:111700800-111716200	Weak transcription	Small Intestine	intestine
17	chr3:111700800-111717400	Weak transcription	Fetal Heart	heart
18	chr3:111701000-111712000	Weak transcription	Fetal Brain Male	brain
19	chr3:111701000-111717400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:111701000-111717400	Weak transcription	NHLF	lung
21	chr3:111701200-111717400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:111702200-111713000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr3:111703000-111712600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:111703600-111711200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:111703800-111711800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:111703800-111716400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:111705200-111712200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:111705200-111713000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:111705800-111712200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:111705800-111712800	Strong transcription	Osteobl	bone
31	chr3:111705800-111713000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:111706000-111711800	Weak transcription	Fetal Intestine Small	intestine
33	chr3:111706000-111717400	Weak transcription	Fetal Stomach	stomach
34	chr3:111706200-111717400	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:111706400-111711800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:111706400-111716400	Weak transcription	Brain Germinal Matrix	brain
37	chr3:111706400-111717400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:111706600-111717400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:111706600-111717400	Weak transcription	Brain Substantia Nigra	brain
40	chr3:111706800-111711600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:111706800-111712000	Weak transcription	Lung	lung
42	chr3:111706800-111712200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:111706800-111712800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:111706800-111717400	Weak transcription	Gastric	stomach
45	chr3:111706800-111717400	Weak transcription	Psoas Muscle	Psoas
46	chr3:111706800-111717600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:111707400-111712000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:111707400-111717400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:111707600-111711800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:111707800-111711200	Weak transcription	Fetal Intestine Large	intestine

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