Variant report

Variant	rs17432174
Chromosome Location	chr6:37290841-37290842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37282099..37284245-chr6:37290002..37291830,2	K562	blood:
2	chr6:37290599..37292900-chr6:37390289..37392598,3	K562	blood:
3	chr6:37282286..37284247-chr6:37288615..37291603,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12528367	0.84[EUR][1000 genomes]
rs13203701	1.00[CHD][hapmap]
rs2776800	0.91[MKK][hapmap]
rs9349033	0.94[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs9462264	1.00[CHB][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17432174	RNF8	cis	parietal	SCAN
rs17432174	KCTD20	cis	cerebellum	SCAN
rs17432174	CYLD	trans	brain	seeQTL
rs17432174	ZNF76	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37277600-37298600	Weak transcription	Psoas Muscle	Psoas
2	chr6:37279400-37291400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:37279400-37292400	Strong transcription	Primary T cells from cord blood	blood
4	chr6:37279600-37291000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:37279600-37291400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:37279800-37292400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:37280000-37291200	Strong transcription	Fetal Muscle Leg	muscle
8	chr6:37280000-37291600	Strong transcription	Thymus	Thymus
9	chr6:37280000-37292800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:37280000-37292800	Strong transcription	Dnd41	blood
11	chr6:37280200-37291000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:37280200-37291400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:37280400-37291000	Strong transcription	Fetal Stomach	stomach
14	chr6:37280600-37291000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:37280600-37291200	Strong transcription	Fetal Intestine Small	intestine
16	chr6:37280600-37291200	Strong transcription	Spleen	Spleen
17	chr6:37280600-37291400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37280600-37291400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:37280600-37291600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:37280600-37292000	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr6:37282800-37293000	Strong transcription	Fetal Thymus	thymus
22	chr6:37283400-37292200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:37284000-37291600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:37285000-37291200	Weak transcription	NHDF-Ad	bronchial
25	chr6:37285000-37298200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:37285000-37298600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:37285200-37291800	Weak transcription	Stomach Mucosa	stomach
28	chr6:37285800-37291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:37285800-37291400	Weak transcription	Right Atrium	heart
30	chr6:37286000-37298600	Weak transcription	Brain Substantia Nigra	brain
31	chr6:37286000-37298800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:37286000-37299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:37286200-37291000	Weak transcription	Fetal Brain Male	brain
34	chr6:37286200-37291400	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:37286200-37298800	Weak transcription	Small Intestine	intestine
36	chr6:37286400-37291200	Weak transcription	Brain Germinal Matrix	brain
37	chr6:37286400-37291200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:37286400-37298600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:37286600-37291400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:37286600-37299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:37287200-37291200	Weak transcription	HSMM	muscle
42	chr6:37287200-37297600	Weak transcription	Esophagus	oesophagus
43	chr6:37287200-37301000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:37287200-37302000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:37287400-37291200	Weak transcription	Fetal Lung	lung
46	chr6:37287400-37293800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:37287600-37292400	Weak transcription	Colonic Mucosa	Colon
48	chr6:37287800-37291400	Weak transcription	NHEK	skin
49	chr6:37287800-37291600	Weak transcription	A549	lung
50	chr6:37287800-37293400	Enhancers	Cortex derived primary cultured neurospheres	brain

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