Variant report

Variant	rs9349033
Chromosome Location	chr6:37241889-37241890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37233977..37239267-chr6:37239299..37244981,7	K562	blood:
2	chr6:37233637..37237565-chr6:37239299..37242828,5	K562	blood:
3	chr6:37239434..37242325-chr6:37280434..37282809,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12528367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17432174	0.94[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2395672	1.00[ASW][hapmap]
rs2776800	0.91[MKK][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9349033	KCTD20	cis	cerebellum	SCAN
rs9349033	RNF8	cis	parietal	SCAN
rs9349033	ZNF76	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37244000	Weak transcription	Gastric	stomach
2	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
5	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
7	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
10	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
11	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:37227200-37247200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:37227200-37247200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:37227200-37247200	Weak transcription	NHLF	lung
15	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
16	chr6:37227400-37247000	Weak transcription	HMEC	breast
17	chr6:37227400-37247400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:37227400-37247600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:37227800-37247800	Weak transcription	Fetal Lung	lung
20	chr6:37228000-37246800	Weak transcription	Hela-S3	cervix
21	chr6:37228000-37247200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:37228200-37247200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:37230800-37247400	Weak transcription	Fetal Brain Female	brain
24	chr6:37231000-37243000	Weak transcription	Right Ventricle	heart
25	chr6:37231000-37244800	Weak transcription	Small Intestine	intestine
26	chr6:37231400-37248200	Weak transcription	Fetal Heart	heart
27	chr6:37232400-37244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37232400-37247200	Weak transcription	Lung	lung
29	chr6:37232400-37255000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:37233400-37243600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:37233400-37250400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:37234000-37251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:37234600-37247000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:37234600-37247200	Weak transcription	Fetal Intestine Small	intestine
35	chr6:37235000-37249200	Weak transcription	Brain Germinal Matrix	brain
36	chr6:37235600-37242600	Strong transcription	HepG2	liver
37	chr6:37235800-37249000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:37236000-37250200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:37236200-37246600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:37236200-37247200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:37237800-37251000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:37238000-37243200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:37238000-37247000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:37238000-37247200	Weak transcription	Placenta	Placenta
45	chr6:37238200-37247400	Weak transcription	HSMM	muscle
46	chr6:37238400-37246600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:37238600-37245600	Weak transcription	K562	blood
48	chr6:37238600-37247000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:37238600-37247000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:37238600-37247200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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