Variant report

Variant	rs17434585
Chromosome Location	chr2:151216744-151216745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151196792..151198427-chr2:151214963..151217254,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10193804	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930106	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11883975	0.83[ASN][1000 genomes]
rs1348214	0.89[ASN][1000 genomes]
rs1348215	0.97[ASN][1000 genomes]
rs1348216	0.97[ASN][1000 genomes]
rs1372439	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372440	0.92[ASN][1000 genomes]
rs1441967	0.89[ASN][1000 genomes]
rs1441977	0.93[ASN][1000 genomes]
rs1441984	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441985	0.97[ASN][1000 genomes]
rs1545231	0.89[ASN][1000 genomes]
rs1545232	0.89[ASN][1000 genomes]
rs1596123	0.93[ASN][1000 genomes]
rs1866977	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866979	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2053494	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083658	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2119751	0.89[ASN][1000 genomes]
rs2334308	0.89[ASN][1000 genomes]
rs4287765	0.93[ASN][1000 genomes]
rs4484034	0.89[ASN][1000 genomes]
rs4487089	0.93[ASN][1000 genomes]
rs4487090	0.93[ASN][1000 genomes]
rs4664198	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61406148	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432736	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719423	0.97[ASN][1000 genomes]
rs6729344	0.93[ASN][1000 genomes]
rs7583055	0.89[ASN][1000 genomes]
rs7585438	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976397	0.93[ASN][1000 genomes]
rs976398	0.92[ASN][1000 genomes]
rs976949	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv834414	chr2:151209374-151413309	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151216600-151216800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links