Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LYPD6-16	chr2:151199391-151200550	l_1967_chr2:151193644-151199994_testes

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10193804	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930106	1.00[JPT][hapmap]
rs1348214	0.89[ASN][1000 genomes]
rs1348215	0.87[ASN][1000 genomes]
rs1348216	0.87[ASN][1000 genomes]
rs1372439	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1372440	0.92[ASN][1000 genomes]
rs1441967	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1441977	0.84[ASN][1000 genomes]
rs1441984	0.87[ASN][1000 genomes]
rs1441985	0.87[ASN][1000 genomes]
rs1545231	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1545232	0.89[ASN][1000 genomes]
rs1596123	0.84[ASN][1000 genomes]
rs17434585	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866979	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2053494	0.90[ASN][1000 genomes]
rs2083658	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119751	0.89[ASN][1000 genomes]
rs2334308	0.89[ASN][1000 genomes]
rs4287765	0.84[ASN][1000 genomes]
rs4484034	0.89[ASN][1000 genomes]
rs4487089	0.84[ASN][1000 genomes]
rs4487090	0.84[ASN][1000 genomes]
rs4664198	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61406148	0.90[ASN][1000 genomes]
rs6432736	0.90[ASN][1000 genomes]
rs6719423	0.87[ASN][1000 genomes]
rs6729344	0.84[ASN][1000 genomes]
rs7583055	0.89[ASN][1000 genomes]
rs7585438	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs976397	0.84[ASN][1000 genomes]
rs976398	0.83[ASN][1000 genomes]
rs976949	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151195600-151199600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:151199200-151199600	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr2:151199400-151199600	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:151199400-151199600	Enhancers	Rectal Mucosa Donor 31	rectum

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