Variant report

Variant	rs17434589
Chromosome Location	chr3:146346195-146346196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10513283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368986	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369097	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17434511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434603	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434840	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3852001	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852002	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852003	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915872	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632512	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848109	0.81[AMR][1000 genomes]
rs56254043	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6808571	0.81[AMR][1000 genomes]
rs73156994	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156997	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159103	0.81[AMR][1000 genomes]
rs73159106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159112	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159113	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159115	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159116	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73159119	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159121	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159123	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159125	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73159126	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159127	0.81[AMR][1000 genomes]
rs73159129	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159131	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159132	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159134	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159135	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73159146	0.81[AMR][1000 genomes]
rs73159151	0.81[AMR][1000 genomes]
rs7651273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822212	1.00[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146342600-146346800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:146343200-146346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:146344600-146351000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:146345400-146346600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:146346000-146350800	Weak transcription	HepG2	liver

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