Variant report

Variant	rs17438
Chromosome Location	chr10:22743321-22743322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22715881..22717864-chr10:22742610..22744631,2	K562	blood:
2	chr10:22633393..22635015-chr10:22743176..22745218,2	K562	blood:

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction

rs_ID	r²[population]
rs7894486	1.00[MEX][hapmap]
rs7907686	0.88[LWK][hapmap];1.00[MEX][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs17438	LGALS4	trans	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22742200-22743400	Enhancers	Fetal Muscle Leg	muscle
2	chr10:22742400-22743600	Enhancers	Fetal Heart	heart
3	chr10:22742400-22743800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:22742600-22743400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:22742600-22743400	Enhancers	Fetal Lung	lung
6	chr10:22742600-22743600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:22742800-22743400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:22742800-22743400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:22742800-22743400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:22742800-22743400	Enhancers	HSMMtube	muscle
11	chr10:22742800-22743600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:22742800-22744800	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:22743000-22743400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:22743000-22743400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:22743000-22743400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:22743000-22743400	Active TSS	Brain Anterior Caudate	brain
17	chr10:22743000-22743400	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr10:22743000-22743800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:22743000-22744400	Enhancers	K562	blood
20	chr10:22743200-22743400	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr10:22743200-22743400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr10:22743200-22743400	Enhancers	NHDF-Ad	bronchial
23	chr10:22743200-22744600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:22743200-22744600	Enhancers	Primary B cells from cord blood	blood

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