Variant report

Variant	rs7907686
Chromosome Location	chr10:22727391-22727392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
2	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
3	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
4	chr10:22724628..22727475-chr10:22730880..22733467,2	K562	blood:
5	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
6	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
7	chr10:22604268..22606309-chr10:22726549..22728219,2	MCF-7	breast:
8	chr10:22723535..22725189-chr10:22726657..22729565,2	K562	blood:
9	chr10:22609617..22612000-chr10:22723353..22727584,5	MCF-7	breast:
10	chr10:22725325..22727863-chr10:22750975..22754414,4	MCF-7	breast:
11	chr10:22541584..22543235-chr10:22725368..22728204,2	MCF-7	breast:
12	chr10:22707988..22710566-chr10:22725566..22727431,2	MCF-7	breast:
13	chr10:22721937..22724239-chr10:22725208..22728501,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000148444	Chromatin interaction

rs_ID	r²[population]
rs16922272	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17438	0.88[LWK][hapmap];1.00[MEX][hapmap]
rs73598519	1.00[AMR][1000 genomes]
rs7894486	1.00[MEX][hapmap]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22725200-22727400	Active TSS	Brain Cingulate Gyrus	brain
2	chr10:22725200-22727400	Active TSS	HSMMtube	muscle
3	chr10:22725400-22727400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:22725400-22727400	Flanking Active TSS	HMEC	breast
5	chr10:22725400-22727600	Active TSS	Left Ventricle	heart
6	chr10:22725400-22727600	Active TSS	Psoas Muscle	Psoas
7	chr10:22725400-22727600	Active TSS	Right Atrium	heart
8	chr10:22725400-22727800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:22725600-22727400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr10:22725600-22727400	Active TSS	Aorta	Aorta
11	chr10:22725600-22727400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:22725600-22727400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr10:22725600-22727400	Active TSS	Fetal Muscle Trunk	muscle
14	chr10:22725600-22727400	Active TSS	Ovary	ovary
15	chr10:22725600-22727400	Active TSS	Placenta Amnion	Placenta Amnion
16	chr10:22725600-22727400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr10:22725600-22727400	Active TSS	HSMM	muscle
18	chr10:22725600-22727600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr10:22725600-22727600	Active TSS	Brain Anterior Caudate	brain
20	chr10:22725600-22727800	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr10:22725800-22727400	Active TSS	Brain Hippocampus Middle	brain
22	chr10:22725800-22727600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:22725800-22727600	Flanking Bivalent TSS/Enh	Dnd41	blood
24	chr10:22725800-22727600	Active TSS	NHLF	lung
25	chr10:22726200-22727400	Active TSS	Fetal Brain Male	brain
26	chr10:22726200-22728200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:22726400-22727600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr10:22726400-22728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:22726600-22727400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr10:22726600-22727400	Flanking Active TSS	Liver	Liver
31	chr10:22726600-22727400	Flanking Active TSS	NH-A	brain
32	chr10:22726600-22727600	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr10:22726600-22727800	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr10:22726600-22727800	Flanking Active TSS	HUVEC	blood vessel
35	chr10:22726800-22727400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:22726800-22727400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:22726800-22727400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr10:22726800-22727400	Flanking Active TSS	Fetal Thymus	thymus
39	chr10:22726800-22727400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr10:22726800-22727400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:22726800-22727600	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr10:22726800-22727600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr10:22726800-22727600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:22726800-22727600	Flanking Active TSS	Thymus	Thymus
45	chr10:22726800-22727800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:22726800-22727800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:22726800-22727800	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr10:22726800-22728000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:22726800-22731400	Weak transcription	Gastric	stomach
50	chr10:22727000-22727400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links