Variant report

Variant	rs1743961
Chromosome Location	chr6:134506513-134506514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134494529..134500516-chr6:134502176..134506962,6	K562	blood:
2	chr6:134506367..134509100-chr6:134517089..134519394,2	MCF-7	breast:
3	chr6:134496713..134498520-chr6:134505052..134506623,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12196153	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1743963	0.84[ASN][1000 genomes]
rs1743964	0.82[ASN][1000 genomes]
rs1763528	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7744920	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134499800-134523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:134500000-134512000	Weak transcription	Right Ventricle	heart
3	chr6:134500200-134507600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:134500200-134507600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:134500200-134508000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:134502000-134509600	Enhancers	HepG2	liver
7	chr6:134503800-134509400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:134504200-134506800	Weak transcription	Stomach Mucosa	stomach
9	chr6:134504200-134508600	Weak transcription	Ovary	ovary
10	chr6:134504400-134512000	Weak transcription	K562	blood
11	chr6:134504600-134508000	Enhancers	Fetal Heart	heart
12	chr6:134504600-134508400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:134504600-134509000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:134504800-134508200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:134504800-134508400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:134504800-134508400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:134504800-134508400	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:134505200-134516400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:134505400-134508200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:134505400-134508400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:134505400-134511200	Weak transcription	Fetal Intestine Large	intestine
22	chr6:134505800-134506600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:134505800-134507000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:134506000-134506800	Weak transcription	Pancreas	Pancrea
25	chr6:134506200-134508200	Enhancers	Primary T cells from cord blood	blood
26	chr6:134506400-134506800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:134506400-134507000	Weak transcription	Left Ventricle	heart

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