Variant report

Variant	rs7744920
Chromosome Location	chr6:134511613-134511614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120636787..120639653-chr6:134510766..134512846,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255857	Chromatin interaction
ENSG00000089157	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12196153	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1743961	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1763528	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134499800-134523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:134500000-134512000	Weak transcription	Right Ventricle	heart
3	chr6:134504400-134512000	Weak transcription	K562	blood
4	chr6:134505200-134516400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:134506600-134522800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:134508000-134518000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:134508200-134512200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:134508800-134515000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:134509000-134514400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:134509200-134512000	Weak transcription	Fetal Heart	heart
12	chr6:134509200-134513800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:134509200-134516400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:134509200-134516400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:134509200-134520000	Weak transcription	Pancreas	Pancrea
16	chr6:134509400-134512200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:134509400-134518000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:134509600-134512000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:134509600-134516400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:134511400-134511800	Weak transcription	HepG2	liver
21	chr6:134511600-134515400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:134511600-134522800	Weak transcription	Primary monocytes fromperipheralblood	blood

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